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<div class="header">
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<a href="#func-members">Functions</a>  </div>
  <div class="headertitle">
<div class="title">Scripts</div>  </div>
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<p>Analysis <b>scripts</b> of the <em>BOSS Afterburner</em>.  
<a href="#details">More...</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:ga82c3521ec84651b43ae2c3f64011b5a8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#ga82c3521ec84651b43ae2c3f64011b5a8">CutFlow</a> (const char *config_file)</td></tr>
<tr class="memdesc:ga82c3521ec84651b43ae2c3f64011b5a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print indications for cut flow.  <a href="#ga82c3521ec84651b43ae2c3f64011b5a8">More...</a><br /></td></tr>
<tr class="separator:ga82c3521ec84651b43ae2c3f64011b5a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga485a4127e521f6a858d8238c5a4bee5c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#ga485a4127e521f6a858d8238c5a4bee5c">Rolke</a> (const char *config_file)</td></tr>
<tr class="memdesc:ga485a4127e521f6a858d8238c5a4bee5c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Based on the <a href="https://nbviewer.jupyter.org/url/root.cern.ch/doc/master/notebooks/Rolke.C.nbconvert.ipynb"><code>Rolke</code> example</a> that comes with ROOT, but adapted with <code><a class="el" href="classYamlLoader.html">YamlLoader</a></code>.  <a href="#ga485a4127e521f6a858d8238c5a4bee5c">More...</a><br /></td></tr>
<tr class="separator:ga485a4127e521f6a858d8238c5a4bee5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa1666bb45cdfbfc28172d43323bd5597"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#gaa1666bb45cdfbfc28172d43323bd5597">FitPwave</a> (const char *config_file)</td></tr>
<tr class="memdesc:gaa1666bb45cdfbfc28172d43323bd5597"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets.  <a href="#gaa1666bb45cdfbfc28172d43323bd5597">More...</a><br /></td></tr>
<tr class="separator:gaa1666bb45cdfbfc28172d43323bd5597"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2d0a4b57ddb2712d7549677ee8013695"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#ga2d0a4b57ddb2712d7549677ee8013695">Voigtian</a> (const char *config_file)</td></tr>
<tr class="memdesc:ga2d0a4b57ddb2712d7549677ee8013695"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets.  <a href="#ga2d0a4b57ddb2712d7549677ee8013695">More...</a><br /></td></tr>
<tr class="separator:ga2d0a4b57ddb2712d7549677ee8013695"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad48094f1d768a7d615dadd0763c0f689"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#gad48094f1d768a7d615dadd0763c0f689">InvestigateContent</a> (const char *config_file)</td></tr>
<tr class="memdesc:gad48094f1d768a7d615dadd0763c0f689"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print the tree and branch structure and cut flow of the file.  <a href="#gad48094f1d768a7d615dadd0763c0f689">More...</a><br /></td></tr>
<tr class="separator:gad48094f1d768a7d615dadd0763c0f689"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaea74292b2a912e3b73aef2be70e6ec46"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Afterburner__scripts.html#gaea74292b2a912e3b73aef2be70e6ec46">PlotBranches</a> (const char *config_file)</td></tr>
<tr class="memdesc:gaea74292b2a912e3b73aef2be70e6ec46"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets.  <a href="#gaea74292b2a912e3b73aef2be70e6ec46">More...</a><br /></td></tr>
<tr class="separator:gaea74292b2a912e3b73aef2be70e6ec46"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<p>Analysis <b>scripts</b> of the <em>BOSS Afterburner</em>. </p>
<p>These are contain the eventual analysis code of the BOSS output files and make use of the objects defined under <code>inc</code>. </p>
<h2 class="groupheader">Function Documentation</h2>
<a id="ga82c3521ec84651b43ae2c3f64011b5a8"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ga82c3521ec84651b43ae2c3f64011b5a8">&#9670;&nbsp;</a></span>CutFlow()</h2>

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          <td class="memname">void CutFlow </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Print indications for cut flow. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 21th, 2019 </dd></dl>
<ol type="1">
<li>Load input files.</li>
<li>Print embedded cut flow.</li>
<li>Extract specific cuts to print.</li>
<li>Compute additional cuts using <code>TTree::Draw</code> and <code>TH1::GetEntries()</code>.</li>
<li>Compute ratios if required by YAML config file.</li>
<li>Set table header and alignment and sort based on sort values.</li>
<li>Print and write the resulting table. </li>
</ol>

<p class="definition">Definition at line <a class="el" href="CutFlow_8C_source.html#l00025">25</a> of file <a class="el" href="CutFlow_8C_source.html">CutFlow.C</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#gaa1666bb45cdfbfc28172d43323bd5597">&#9670;&nbsp;</a></span>FitPwave()</h2>

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          <td class="memname">void FitPwave </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 1st, 2019 </dd></dl>

<p class="definition">Definition at line <a class="el" href="Pwave_8C_source.html#l00023">23</a> of file <a class="el" href="Pwave_8C_source.html">Pwave.C</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#gad48094f1d768a7d615dadd0763c0f689">&#9670;&nbsp;</a></span>InvestigateContent()</h2>

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          <td class="memname">void InvestigateContent </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Print the tree and branch structure and cut flow of the file. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 19th, 2019 </dd></dl>

<p class="definition">Definition at line <a class="el" href="InvestigateContent_8C_source.html#l00016">16</a> of file <a class="el" href="InvestigateContent_8C_source.html">InvestigateContent.C</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#gaea74292b2a912e3b73aef2be70e6ec46">&#9670;&nbsp;</a></span>PlotBranches()</h2>

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        <tr>
          <td class="memname">void PlotBranches </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>April 30th, 2019 </dd></dl>

<p class="definition">Definition at line <a class="el" href="PlotBranches_8C_source.html#l00016">16</a> of file <a class="el" href="PlotBranches_8C_source.html">PlotBranches.C</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#ga485a4127e521f6a858d8238c5a4bee5c">&#9670;&nbsp;</a></span>Rolke()</h2>

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          <td class="memname">void Rolke </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Based on the <a href="https://nbviewer.jupyter.org/url/root.cern.ch/doc/master/notebooks/Rolke.C.nbconvert.ipynb"><code>Rolke</code> example</a> that comes with ROOT, but adapted with <code><a class="el" href="classYamlLoader.html">YamlLoader</a></code>. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 9th, 2019</dd></dl>
<dl class="section see"><dt>See also</dt><dd><a href="https://root.cern.ch/doc/master/classTRolke.html"><code>TRolke</code> class description</a>. </dd></dl>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 9th, 2019 </dd></dl>
<p>Model 1 assumes:</p><ul>
<li>Poisson uncertainty in the background estimate</li>
<li>Binomial uncertainty in the efficiency estimate</li>
</ul>
<p>Model 2 assumes:</p><ul>
<li>Poisson uncertainty in the background estimate</li>
<li>Gaussian uncertainty in the efficiency estimate</li>
</ul>
<p>Model 3 assumes:</p><ul>
<li>Gaussian uncertainty in the background estimate</li>
<li>Gaussian uncertainty in the efficiency estimate</li>
</ul>
<p>Model 4 assumes:</p><ul>
<li>Poisson uncertainty in the background estimate</li>
<li>known efficiency</li>
</ul>
<p>Model 5 assumes:</p><ul>
<li>Gaussian uncertainty in the background estimate</li>
<li>Known efficiency</li>
</ul>
<p>Model 6 assumes:</p><ul>
<li>Background expectation value (considered known)</li>
<li>Binomial uncertainty in the efficiency estimate</li>
</ul>
<p>Model 7 assumes:</p><ul>
<li>Known Background</li>
<li>Gaussian uncertainty in the efficiency estimate</li>
</ul>
<h1><a class="anchor" id="autotoc_md0"></a>
Example of bounded and unbounded likelihood</h1>
<p>Example for Model 1 </p>

<p class="definition">Definition at line <a class="el" href="Rolke_8C_source.html#l00017">17</a> of file <a class="el" href="Rolke_8C_source.html">Rolke.C</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#ga2d0a4b57ddb2712d7549677ee8013695">&#9670;&nbsp;</a></span>Voigtian()</h2>

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          <td class="memname">void Voigtian </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>config_file</em></td><td>)</td>
          <td></td>
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<p>Generate histograms from branches in <code>TTree</code>s in exclusive and inclusive Monte Carlo sets and in measurement data sets. </p>
<dl class="section author"><dt>Author</dt><dd>Remco de Boer 雷穆克 (<a href="#" onclick="location.href='mai'+'lto:'+'r.e'+'.d'+'ebo'+'er'+'@st'+'ud'+'ent'+'s.'+'uu.'+'nl'; return false;">r.e.d<span style="display: none;">.nosp@m.</span>eboe<span style="display: none;">.nosp@m.</span>r@stu<span style="display: none;">.nosp@m.</span>dent<span style="display: none;">.nosp@m.</span>s.uu.<span style="display: none;">.nosp@m.</span>nl</a> or <a href="#" onclick="location.href='mai'+'lto:'+'rem'+'co'+'.de'+'.b'+'oer'+'@i'+'hep'+'.a'+'c.c'+'n'; return false;">remco<span style="display: none;">.nosp@m.</span>.de.<span style="display: none;">.nosp@m.</span>boer@<span style="display: none;">.nosp@m.</span>ihep<span style="display: none;">.nosp@m.</span>.ac.c<span style="display: none;">.nosp@m.</span>n</a>) </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 8th, 2019 </dd></dl>

<p class="definition">Definition at line <a class="el" href="Voigtian_8C_source.html#l00027">27</a> of file <a class="el" href="Voigtian_8C_source.html">Voigtian.C</a>.</p>

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